EnhancerDB
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  3. rs536965280[chr1:1616552]
Enhancers that have rs536965280[chr1:1616552]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1607365 1622353 enh2
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs536965280[chr1:1616552]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1616544 1616559 FOXP1 JASPAR yes 26198899
chr1 1616545 1616560 FOXP1 JASPAR yes 26198900
chr1 1616546 1616561 FOXP1 JASPAR yes 26198901
chr1 1616547 1616562 FOXP1 JASPAR yes 26198902
chr1 1616548 1616563 FOXP1 JASPAR yes 26198903
chr1 1616548 1616569 IRF1 JASPAR yes 26198904
chr1 1616549 1616564 FOXP1 JASPAR yes 26198905
chr1 1616552 1616567 PRDM1 JASPAR yes 26198906
chr1 1616552 1616567 STAT2 JASPAR yes 26198907
Genes associated with rs536965280[chr1:1616552], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More