EnhancerDB
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  3. rs538909886[chr12:58290113]
Enhancers that have rs538909886[chr12:58290113]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 58279727 58295915 enh2398
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs538909886[chr12:58290113]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 58289962 58290322 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21551660
chr12 58290018 58290208 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21551661
chr12 58290100 58290119 REST JASPAR yes 121148461
chr12 58290103 58290122 CTCF JASPAR yes 121148462
chr12 58290106 58290120 GLIS2 JASPAR yes 121148463
chr12 58290106 58290120 ZIC1 JASPAR yes 121148464
chr12 58290106 58290121 ZIC3 JASPAR yes 121148465
chr12 58290106 58290121 ZIC4 JASPAR yes 121148466
Genes associated with rs538909886[chr12:58290113], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More