EnhancerDB
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  3. rs538996041[chr19:13140142]
Enhancers that have rs538996041[chr19:13140142]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13138760 13157647 enh17929
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs538996041[chr19:13140142]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13139579 13141042 TCF7L2 GTRD no Colon (HCT116) 21850169
chr19 13139579 13141042 TCF7L2 GTRD no Colon (HCT116) 108387482
chr19 13139783 13141220 TCF7L2 GTRD no Colon (HCT116) 21850170
chr19 13139783 13141220 TCF7L2 GTRD no Colon (HCT116) 108387483
chr19 13139832 13141115 TCF7L2 GTRD no Colon (HCT116) 21850171
chr19 13139832 13141115 TCF7L2 GTRD no Colon (HCT116) 108387484
chr19 13140130 13140148 MAFF JASPAR yes 112502415
chr19 13140131 13140146 MAFK JASPAR yes 112502416
chr19 13140132 13140840 TCF7L2 GTRD no Colon (HCT116) 21850172
chr19 13140132 13140840 TCF7L2 GTRD no Colon (HCT116) 108387485
chr19 13140140 13140144 YY1 TRANSFAC yes 112502417
chr19 13140141 13140156 MEF2C JASPAR yes 112502418
Genes associated with rs538996041[chr19:13140142], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More