EnhancerDB
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  3. rs539042008[chr12:56440835]
Enhancers that have rs539042008[chr12:56440835]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 56438391 56456078 enh2386
Bone Marrow (K562) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Blood (T-cell) Stomach
Transcript factors that have rs539042008[chr12:56440835]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 56440571 56440950 SOX2 GTRD no Neural Stem Cells (H9) 21550922
chr12 56440827 56440839 HES5 JASPAR yes 121087378
chr12 56440827 56440839 HES7 JASPAR yes 121087379
chr12 56440828 56440838 HEY1 JASPAR yes 121087380
chr12 56440828 56440838 HEY2 JASPAR yes 121087381
Genes associated with rs539042008[chr12:56440835], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More