EnhancerDB
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  3. rs539053541[chr1:25054211]
Enhancers that have rs539053541[chr1:25054211]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539053541[chr1:25054211]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25054203 25054215 TFAP2A JASPAR yes 27523906
chr1 25054203 25054215 TFAP2B JASPAR yes 27523907
chr1 25054203 25054215 TFAP2C JASPAR yes 27523908
chr1 25054203 25054218 TFAP2A JASPAR yes 27523909
chr1 25054203 25054218 TFAP2C JASPAR yes 27523910
chr1 25054205 25054214 TFAP2A JASPAR yes 27523911
Genes associated with rs539053541[chr1:25054211], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More