EnhancerDB
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  3. rs539054717[chr17:48930478]
Enhancers that have rs539054717[chr17:48930478]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 48919785 48943275 enh4463
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs539054717[chr17:48930478]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 48927924 48932539 ZNF274 GTRD no Liver (HepG2) 21769956
chr17 48928182 48931249 ZNF274 GTRD no Liver (HepG2) 21769958
chr17 48928376 48931225 ZNF274 GTRD no Liver (HepG2) 21769960
chr17 48929608 48931073 ZNF274 GTRD no Liver (HepG2) 21769985
chr17 48930020 48931126 ZNF274 GTRD no Liver (HepG2) 21769987
chr17 48930271 48930983 ZNF274 GTRD no Liver (HepG2) 21769988
chr17 48930281 48931039 ZNF274 GTRD no Liver (HepG2) 21769989
chr17 48930388 48930711 ZNF143 GTRD no Epithelial (MCF-7) 21769990
chr17 48930451 48930535 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21769991
chr17 48930465 48930485 PPARG JASPAR yes 54725556
chr17 48930466 48930481 FOXA1 JASPAR yes 54725558
chr17 48930467 48930478 BATF JASPAR yes 54725559
chr17 48930467 48930478 FOXB1 JASPAR yes 54725560
chr17 48930467 48930478 FOXC1 JASPAR yes 54725561
chr17 48930467 48930479 FOXC2 JASPAR yes 54725562
chr17 48930476 48930494 IRF2 JASPAR yes 54725563
Genes associated with rs539054717[chr17:48930478], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More