EnhancerDB
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  3. rs539079928[chr17:74406560]
Enhancers that have rs539079928[chr17:74406560]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 74401123 74447132 enh4607
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539079928[chr17:74406560]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 74406549 74406560 GCM1 JASPAR yes 55996632
chr17 74406550 74406566 ZNF143 JASPAR yes 55996633
chr17 74406558 74406571 SCRT2 JASPAR yes 55996634
Genes associated with rs539079928[chr17:74406560], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More