EnhancerDB
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  3. rs539117738[chr17:39807835]
Enhancers that have rs539117738[chr17:39807835]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39800139 39815735 enh17152
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Lung (A549) Stomach Placenta Colon (HCT116) Thyroid Muscle (Myoblast) Breast Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
chr17 39807728 39808143 vista24791
VISTA
Transcript factors that have rs539117738[chr17:39807835]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39807793 39808169 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758043
chr17 39807793 39808169 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259199
chr17 39807813 39808473 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758044
chr17 39807813 39808473 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259200
chr17 39807818 39808274 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21758045
chr17 39807818 39808274 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108259201
chr17 39807833 39807846 NFKB1 JASPAR yes 21238751
chr17 39807833 39807846 NFKB2 JASPAR yes 21238752
chr17 39807833 39807846 NFKB1 JASPAR yes 54268570
chr17 39807833 39807846 NFKB2 JASPAR yes 54268571
chr17 39807834 39807845 NFKB1 JASPAR yes 21238753
chr17 39807834 39807845 NFKB1 JASPAR yes 54268572
chr17 39807835 39807845 NFKB1 JASPAR yes 21238754
chr17 39807835 39807845 NFKB1 JASPAR yes 54268573
chr17 39807835 39807846 NFKB1 JASPAR yes 21238755
chr17 39807835 39807846 NFKB1 JASPAR yes 54268574
Genes associated with rs539117738[chr17:39807835], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More