EnhancerDB
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  3. rs539117843[chr17:62990458]
Enhancers that have rs539117843[chr17:62990458]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539117843[chr17:62990458]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62990440 62990459 RFX2 JASPAR yes 55336763
chr17 62990444 62990460 RFX2 JASPAR yes 55336764
chr17 62990444 62990460 RFX3 JASPAR yes 55336765
chr17 62990447 62990458 CDX2 JASPAR yes 55336771
Genes associated with rs539117843[chr17:62990458], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More