EnhancerDB
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  3. rs539197235[chr1:201713452]
Enhancers that have rs539197235[chr1:201713452]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs539197235[chr1:201713452]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 21365291
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 107857068
chr1 201711501 201715159 ZNF143 GTRD no Epithelial (MCF-7) 107857070
chr1 201711660 201713990 ZNF274 GTRD no Bone Marrow (K562) 107857072
chr1 201711669 201715412 ZNF143 GTRD no Epithelial (MCF-7) 107857073
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 21365293
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 107857074
chr1 201713440 201713455 FOXA1 JASPAR yes 34527382
chr1 201713441 201713453 FOXI1 JASPAR yes 34527383
chr1 201713441 201713456 FOXP1 JASPAR yes 34527384
chr1 201713442 201713454 FOXC2 JASPAR yes 34527385
chr1 201713442 201713456 ONECUT3 JASPAR yes 34527386
chr1 201713443 201713454 FOXB1 JASPAR yes 34527387
chr1 201713443 201713454 FOXC1 JASPAR yes 34527388
chr1 201713443 201713459 POU4F2 JASPAR yes 34527389
chr1 201713443 201713459 POU4F3 JASPAR yes 34527390
chr1 201713444 201713459 FOXA1 JASPAR yes 34527392
chr1 201713445 201713457 FOXI1 JASPAR yes 34527393
chr1 201713445 201713459 POU4F1 JASPAR yes 34527394
chr1 201713445 201713460 FOXP1 JASPAR yes 34527395
chr1 201713445 201713460 HNF1A JASPAR yes 34527396
chr1 201713446 201713458 FOXC2 JASPAR yes 34527397
chr1 201713446 201713460 ONECUT2 JASPAR yes 34527398
chr1 201713446 201713460 ONECUT3 JASPAR yes 34527399
chr1 201713447 201713458 FOXB1 JASPAR yes 34527400
chr1 201713447 201713458 FOXC1 JASPAR yes 34527401
chr1 201713447 201713458 PROP1 JASPAR yes 34527402
chr1 201713447 201713463 POU4F2 JASPAR yes 34527403
chr1 201713447 201713463 POU4F3 JASPAR yes 34527404
chr1 201713448 201713452 YY1 TRANSFAC yes 34527405
chr1 201713448 201713463 FOXA1 JASPAR yes 34527406
chr1 201713449 201713461 FOXI1 JASPAR yes 34527407
chr1 201713449 201713463 POU4F1 JASPAR yes 34527408
chr1 201713449 201713464 FOXP1 JASPAR yes 34527409
chr1 201713449 201713464 HNF1A JASPAR yes 34527410
chr1 201713450 201713462 FOXC2 JASPAR yes 34527411
chr1 201713450 201713464 ONECUT2 JASPAR yes 34527412
chr1 201713450 201713464 ONECUT3 JASPAR yes 34527413
chr1 201713451 201713462 FOXB1 JASPAR yes 34527414
chr1 201713451 201713462 FOXC1 JASPAR yes 34527415
chr1 201713451 201713462 PROP1 JASPAR yes 34527416
chr1 201713451 201713467 POU4F2 JASPAR yes 34527417
chr1 201713451 201713467 POU4F3 JASPAR yes 34527418
chr1 201713452 201713456 YY1 TRANSFAC yes 34527419
chr1 201713452 201713467 FOXA1 JASPAR yes 34527420
Genes associated with rs539197235[chr1:201713452], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More