EnhancerDB
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  3. rs539203446[chr6:107990193]
Enhancers that have rs539203446[chr6:107990193]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 107984585 108002855 enh9300
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Blood (T-cell) Astrocyte Bone (Osteoblast) Colon (HCT116) Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs539203446[chr6:107990193]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 107990182 107990198 POU4F2 JASPAR yes 104128340
chr6 107990185 107990195 EMX1 JASPAR yes 104128341
chr6 107990185 107990195 EMX2 JASPAR yes 104128342
chr6 107990185 107990195 ESX1 JASPAR yes 104128343
chr6 107990185 107990195 EVX1 JASPAR yes 104128344
chr6 107990185 107990195 EVX2 JASPAR yes 104128345
chr6 107990185 107990195 GBX2 JASPAR yes 104128346
chr6 107990185 107990195 HESX1 JASPAR yes 104128347
chr6 107990185 107990195 HOXA2 JASPAR yes 104128348
chr6 107990185 107990195 HOXB2 JASPAR yes 104128349
chr6 107990185 107990195 HOXB3 JASPAR yes 104128350
chr6 107990185 107990195 LHX2 JASPAR yes 104128351
chr6 107990185 107990195 LHX6 JASPAR yes 104128352
chr6 107990185 107990195 MEOX1 JASPAR yes 104128353
chr6 107990185 107990195 MEOX2 JASPAR yes 104128354
chr6 107990185 107990195 POU6F1 JASPAR yes 104128355
chr6 107990185 107990195 RAX JASPAR yes 104128356
chr6 107990186 107990194 LBX1 JASPAR yes 104128357
chr6 107990186 107990194 PDX1 JASPAR yes 104128358
chr6 107990186 107990194 VAX1 JASPAR yes 104128359
chr6 107990186 107990194 VAX2 JASPAR yes 104128360
chr6 107990186 107990194 VSX1 JASPAR yes 104128361
chr6 107990186 107990194 VSX2 JASPAR yes 104128362
chr6 107990186 107990196 POU6F2 JASPAR yes 104128363
Genes associated with rs539203446[chr6:107990193], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More