EnhancerDB
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  3. rs539209657[chr1:17889731]
Enhancers that have rs539209657[chr1:17889731]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 17883825 17906655 enh11558
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs539209657[chr1:17889731]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 17889721 17889742 IRF1 JASPAR yes 27102234
chr1 17889722 17889743 IRF1 JASPAR yes 27102235
chr1 17889726 17889747 IRF1 JASPAR yes 27102236
chr1 17889727 17889742 FOXP1 JASPAR yes 27102237
chr1 17889727 17889748 IRF1 JASPAR yes 27102238
chr1 17889729 17889744 FOXP1 JASPAR yes 27102239
chr1 17889731 17889746 FOXP1 JASPAR yes 27102240
Genes associated with rs539209657[chr1:17889731], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More