EnhancerDB
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  3. rs539242540[chr1:204252098]
Enhancers that have rs539242540[chr1:204252098]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204245511 204275535 enh12577
Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539242540[chr1:204252098]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204252095 204252109 EBF1 JASPAR yes 34687785
chr1 204252096 204252107 EBF1 JASPAR yes 34687786
Genes associated with rs539242540[chr1:204252098], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More