EnhancerDB
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  3. rs539244517[chr19:11058270]
Enhancers that have rs539244517[chr19:11058270]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 11044165 11061272 enh17918
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs539244517[chr19:11058270]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 11058100 11058566 TCF7L2 GTRD no Colon (HCT116) 21849293
chr19 11058117 11059101 ZNF143 GTRD no Epithelial (MCF-7) 21849294
chr19 11058132 11058987 TCF7L2 GTRD no Colon (HCT116) 21849295
chr19 11058262 11058271 PITX3 JASPAR yes 112447984
chr19 11058263 11058271 RHOXF1 JASPAR yes 112447985
chr19 11058267 11058275 TBX15 JASPAR yes 112447986
Genes associated with rs539244517[chr19:11058270], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More