EnhancerDB
  1. Home
  2. SNP
  3. rs539244799[chr1:41348425]
Enhancers that have rs539244799[chr1:41348425]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41333905 41349008 enh11777
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Heart
Transcript factors that have rs539244799[chr1:41348425]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41348416 41348428 NHLH1 JASPAR yes 28350105
chr1 41348416 41348431 ZIC4 JASPAR yes 28350106
chr1 41348417 41348431 GLIS2 JASPAR yes 28350107
chr1 41348417 41348431 ZIC1 JASPAR yes 28350108
Genes associated with rs539244799[chr1:41348425], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More