EnhancerDB
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  3. rs539252425[chr6:36580392]
Enhancers that have rs539252425[chr6:36580392]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 36569515 36588579 enh23193
Liver Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs539252425[chr6:36580392]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 36580384 36580405 IRF1 JASPAR yes 101349116
chr6 36580385 36580400 FOXP1 JASPAR yes 101349117
chr6 36580386 36580401 STAT2 JASPAR yes 101349118
chr6 36580387 36580401 STAT1 JASPAR yes 101349119
chr6 36580387 36580402 FOXP1 JASPAR yes 101349120
chr6 36580388 36580409 IRF1 JASPAR yes 101349121
chr6 36580389 36580404 FOXP1 JASPAR yes 101349122
chr6 36580390 36580405 FOXP1 JASPAR yes 101349123
chr6 36580390 36580411 IRF1 JASPAR yes 101349124
chr6 36580392 36580413 IRF1 JASPAR yes 101349125
Genes associated with rs539252425[chr6:36580392], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More