EnhancerDB
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  3. rs539256772[chr1:41344967]
Enhancers that have rs539256772[chr1:41344967]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41333905 41349008 enh11777
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Heart
Transcript factors that have rs539256772[chr1:41344967]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41344954 41344970 SOX8 JASPAR yes 28349608
chr1 41344959 41344971 TGIF1 JASPAR yes 28349610
chr1 41344966 41344976 EMX1 JASPAR yes 28349611
chr1 41344966 41344976 GSX2 JASPAR yes 28349612
chr1 41344966 41344976 HOXB2 JASPAR yes 28349613
chr1 41344966 41344976 MEOX2 JASPAR yes 28349614
chr1 41344966 41344976 MNX1 JASPAR yes 28349615
chr1 41344967 41344975 LMX1A JASPAR yes 28349616
chr1 41344967 41344975 LMX1B JASPAR yes 28349617
chr1 41344967 41344975 NKX6-1 JASPAR yes 28349618
chr1 41344967 41344975 NKX6-2 JASPAR yes 28349619
chr1 41344967 41344975 PDX1 JASPAR yes 28349620
chr1 41344967 41344975 VAX1 JASPAR yes 28349621
chr1 41344967 41344975 VAX2 JASPAR yes 28349622
chr1 41344967 41344975 VSX1 JASPAR yes 28349623
Genes associated with rs539256772[chr1:41344967], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More