EnhancerDB
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  3. rs539283271[chr1:27048745]
Enhancers that have rs539283271[chr1:27048745]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27041525 27053715 enh11655
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539283271[chr1:27048745]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27048728 27048748 RREB1 JASPAR yes 27653082
chr1 27048732 27048752 RREB1 JASPAR yes 27653083
chr1 27048733 27048753 RREB1 JASPAR yes 27653084
chr1 27048740 27048746 TCF4 TRANSFAC yes 27653085
chr1 27048740 27048752 FOXI1 JASPAR yes 27653086
chr1 27048740 27048755 FOXP1 JASPAR yes 27653087
chr1 27048741 27048753 FOXC2 JASPAR yes 27653088
chr1 27048743 27048754 FOXA1 JASPAR yes 27653089
chr1 27048744 27048759 FOXP1 JASPAR yes 27653090
chr1 27048745 27048754 SRY JASPAR yes 27653091
chr1 27048745 27048756 FOXP2 JASPAR yes 27653092
Genes associated with rs539283271[chr1:27048745], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More