EnhancerDB
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  3. rs539390594[chr17:76324958]
Enhancers that have rs539390594[chr17:76324958]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 76316725 76355075 enh17407
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539390594[chr17:76324958]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 76324950 76324963 SMAD2 JASPAR yes 56147817
chr17 76324955 76324963 TBX15 JASPAR yes 56147818
chr17 76324955 76324963 TBX4 JASPAR yes 56147819
chr17 76324955 76324964 ZEB1 JASPAR yes 56147820
chr17 76324956 76324966 ID4 JASPAR yes 56147821
chr17 76324956 76324966 TCF3 JASPAR yes 56147822
chr17 76324956 76324966 TCF4 JASPAR yes 56147823
chr17 76324957 76324966 SNAI2 JASPAR yes 56147824
chr17 76324958 76324963 USF2 TRANSFAC yes 56147825
Genes associated with rs539390594[chr17:76324958], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More