EnhancerDB
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  3. rs539399057[chr16:17473203]
Enhancers that have rs539399057[chr16:17473203]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 17466580 17495935 enh3923
Brain (SK-N-SH) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Astrocyte Blood (OCI-LY7) Blood (GM12878) Stomach Thyroid Peripheral Blood (MM.1S) Uterus Adrenal Blood (Karpas-422) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Heart
Transcript factors that have rs539399057[chr16:17473203]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 17472467 17473257 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108186015
chr16 17472727 17473393 P63 GTRD no Skin (Keratinocyte) 108186016
chr16 17472766 17473315 P63 GTRD no Skin (Keratinocyte) 108186017
chr16 17472965 17473409 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21694754
chr16 17472965 17473409 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108186018
chr16 17472999 17473483 GATA3 UCSC Txn Factor no Conserved 108186019
chr16 17473005 17473361 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21694755
chr16 17473005 17473361 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108186020
chr16 17473053 17473394 GATA2 UCSC Txn Factor no Conserved 108186021
chr16 17473085 17473341 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21694756
chr16 17473085 17473341 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108186022
chr16 17473107 17473318 EP300 UCSC Txn Factor no Conserved 108186023
chr16 17473198 17473211 DUXA JASPAR yes 9802999
chr16 17473199 17473210 DUX4 JASPAR yes 9803001
Genes associated with rs539399057[chr16:17473203], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More