EnhancerDB
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  3. rs539542001[chr16:85622816]
Enhancers that have rs539542001[chr16:85622816]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85541745 85623813 enh16872
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539542001[chr16:85622816]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85620382 85623152 ZNF143 GTRD no Epithelial (MCF-7) 21730608
chr16 85620382 85623152 ZNF143 GTRD no Epithelial (MCF-7) 107687014
chr16 85620987 85623080 ZNF143 GTRD no Epithelial (MCF-7) 21730627
chr16 85620987 85623080 ZNF143 GTRD no Epithelial (MCF-7) 107687034
chr16 85621480 85623075 ZNF274 GTRD no Liver (HepG2) 21730631
chr16 85621480 85623075 ZNF274 GTRD no Liver (HepG2) 107687038
chr16 85621488 85623094 ZNF274 GTRD no Liver (HepG2) 21730632
chr16 85621488 85623094 ZNF274 GTRD no Liver (HepG2) 107687039
chr16 85621489 85623008 ZNF274 GTRD no Liver (HepG2) 21730633
chr16 85621489 85623008 ZNF274 GTRD no Liver (HepG2) 107687040
chr16 85621570 85622896 ZNF143 GTRD no Epithelial (MCF-7) 21730635
chr16 85621570 85622896 ZNF143 GTRD no Epithelial (MCF-7) 107687042
chr16 85621571 85622839 ZNF274 GTRD no Liver (HepG2) 21730636
chr16 85621571 85622839 ZNF274 GTRD no Liver (HepG2) 107687043
chr16 85621653 85622846 ZNF274 GTRD no Liver (HepG2) 21730639
chr16 85621653 85622846 ZNF274 GTRD no Liver (HepG2) 107687046
chr16 85621690 85622875 ZNF274 GTRD no Liver (HepG2) 21730642
chr16 85621690 85622875 ZNF274 GTRD no Liver (HepG2) 107687049
chr16 85621778 85622955 ZNF274 GTRD no Liver (HepG2) 21730648
chr16 85621863 85623085 ZNF274 GTRD no Liver (HepG2) 21730661
Genes associated with rs539542001[chr16:85622816], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More