EnhancerDB
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  3. rs539549227[chr3:119881981]
Enhancers that have rs539549227[chr3:119881981]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 119860605 119883439 enh7479
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs539549227[chr3:119881981]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 119881968 119881983 TFAP2A JASPAR yes 5198853
chr3 119881978 119881992 STAT1 JASPAR yes 5198854
chr3 119881978 119881993 STAT2 JASPAR yes 5198855
chr3 119881978 119881996 IRF2 JASPAR yes 5198856
Genes associated with rs539549227[chr3:119881981], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More