EnhancerDB
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  3. rs539554470[chr5:90603438]
Enhancers that have rs539554470[chr5:90603438]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 90595425 90613326 enh22427
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539554470[chr5:90603438]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 90603434 90603442 ISX JASPAR yes 64190912
chr5 90603434 90603442 LHX9 JASPAR yes 64190913
chr5 90603434 90603442 LMX1B JASPAR yes 64190914
chr5 90603434 90603442 PRRX1 JASPAR yes 64190915
chr5 90603434 90603442 RAX2 JASPAR yes 64190916
chr5 90603434 90603442 SHOX JASPAR yes 64190917
chr5 90603434 90603442 UNCX JASPAR yes 64190918
chr5 90603437 90603442 MYB TRANSFAC yes 64190919
Genes associated with rs539554470[chr5:90603438], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More