EnhancerDB
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  3. rs539577954[chr1:225633928]
Enhancers that have rs539577954[chr1:225633928]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539577954[chr1:225633928]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225633911 225633991 ZNF274 GTRD no Bone Marrow (K562) 21384726
chr1 225633925 225633935 HMBOX1 JASPAR yes 35741097
chr1 225633925 225634201 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21384727
chr1 225633927 225633930 MYB TRANSFAC yes 35741098
Genes associated with rs539577954[chr1:225633928], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More