EnhancerDB
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  3. rs539592671[chr1:2178658]
Enhancers that have rs539592671[chr1:2178658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 2162230 2193653 enh11423
Bone Marrow (K562) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539592671[chr1:2178658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 2175546 2181036 ZNF274 GTRD no Bone Marrow (K562) 107801815
chr1 2178646 2178658 YY1 JASPAR yes 26226555
chr1 2178654 2178669 FOXP1 JASPAR yes 26226556
chr1 2178655 2178676 IRF1 JASPAR yes 26226557
chr1 2178656 2178662 TBP TRANSFAC yes 26226558
chr1 2178656 2178667 FOXC1 JASPAR yes 26226559
chr1 2178656 2178668 FOXC2 JASPAR yes 26226560
chr1 2178657 2178668 FOXP2 JASPAR yes 26226561
Genes associated with rs539592671[chr1:2178658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More