EnhancerDB
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  3. rs539614342[chr1:206892952]
Enhancers that have rs539614342[chr1:206892952]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 206857225 206902007 enh27440
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs539614342[chr1:206892952]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 206889553 206893010 ZNF274 GTRD no Cervix (HeLa-S3) 21372472
chr1 206889553 206893010 ZNF274 GTRD no Cervix (HeLa-S3) 107863290
chr1 206889553 206893010 ZNF274 GTRD no Cervix (HeLa-S3) 107863291
chr1 206889866 206893225 ZNF274 GTRD no Cervix (HeLa-S3) 21372485
chr1 206889866 206893225 ZNF274 GTRD no Cervix (HeLa-S3) 107863304
chr1 206889866 206893225 ZNF274 GTRD no Cervix (HeLa-S3) 107863305
chr1 206891402 206893954 ZNF274 GTRD no Cervix (HeLa-S3) 21372554
chr1 206891402 206893954 ZNF274 GTRD no Cervix (HeLa-S3) 107863380
chr1 206891685 206893943 TEF1 GTRD no Bone (Osteoblast) 21372555
chr1 206891685 206893943 TEF1 GTRD no Bone (Osteoblast) 107863381
chr1 206892105 206893248 ZNF274 GTRD no Cervix (HeLa-S3) 21372556
chr1 206892105 206893248 ZNF274 GTRD no Cervix (HeLa-S3) 107863382
chr1 206892133 206893635 ZNF274 GTRD no Cervix (HeLa-S3) 21372557
chr1 206892133 206893635 ZNF274 GTRD no Cervix (HeLa-S3) 107863383
chr1 206892235 206893501 AR GTRD no Prostate (PC-3) 21372558
chr1 206892235 206893501 AR GTRD no Prostate (PC-3) 107863384
chr1 206892298 206893321 ZNF274 GTRD no Cervix (HeLa-S3) 21372559
chr1 206892298 206893321 ZNF274 GTRD no Cervix (HeLa-S3) 107863385
chr1 206892419 206893015 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21372561
chr1 206892419 206893015 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107863387
chr1 206892473 206892993 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21372563
chr1 206892473 206892993 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107863389
chr1 206892477 206893116 ZBTB33 GTRD no Lung (A549) 21372564
chr1 206892477 206893116 ZBTB33 GTRD no Lung (A549) 107863390
chr1 206892488 206893108 ZBTB33 GTRD no Lung (A549) 21372565
chr1 206892488 206893108 ZBTB33 GTRD no Lung (A549) 107863391
chr1 206892528 206892955 ZNF274 GTRD no Bone Marrow (K562) 21372566
chr1 206892528 206892955 ZNF274 GTRD no Bone Marrow (K562) 107863392
chr1 206892579 206892963 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21372570
chr1 206892579 206892963 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107863396
chr1 206892677 206893203 ZBTB33 GTRD no Lung (A549) 21372571
chr1 206892677 206893203 ZBTB33 GTRD no Lung (A549) 107863397
chr1 206892679 206892989 ZBTB33 GTRD no Lung (A549) 21372572
chr1 206892679 206892989 ZBTB33 GTRD no Lung (A549) 107863398
chr1 206892950 206892967 PAX1 JASPAR yes 34822052
Genes associated with rs539614342[chr1:206892952], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More