EnhancerDB
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  3. rs539638878[chr1:16498084]
Enhancers that have rs539638878[chr1:16498084]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539638878[chr1:16498084]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16497372 16500088 ZNF274 GTRD no Bone Marrow (K562) 107802224
chr1 16497372 16500088 ZNF274 GTRD no Bone Marrow (K562) 107802225
chr1 16498077 16498092 TFAP2A JASPAR yes 27030791
chr1 16498080 16498092 TFAP2A JASPAR yes 27030792
chr1 16498080 16498092 TFAP2B JASPAR yes 27030793
chr1 16498080 16498092 TFAP2C JASPAR yes 27030794
chr1 16498081 16498090 TFAP2A JASPAR yes 27030795
Genes associated with rs539638878[chr1:16498084], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More