EnhancerDB
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  3. rs539673800[chr12:116897000]
Enhancers that have rs539673800[chr12:116897000]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 116889515 116899995 enh15029
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs539673800[chr12:116897000]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 116896993 116897006 SMAD2 JASPAR yes 123998017
chr12 116896994 116897009 PRDM1 JASPAR yes 123998018
chr12 116896996 116897010 IRF7 JASPAR yes 123998019
Genes associated with rs539673800[chr12:116897000], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More