EnhancerDB
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  3. rs539862752[chr1:222011438]
Enhancers that have rs539862752[chr1:222011438]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 221995465 222021667 enh12697
Liver Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
chr1 222011312 222011511 vista5227
VISTA
Transcript factors that have rs539862752[chr1:222011438]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 222008919 222013530 AR GTRD no Prostate (PC-3) 21382826
chr1 222008919 222013530 AR GTRD no Prostate (PC-3) 107872234
chr1 222011300 222011468 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21382862
chr1 222011300 222011468 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107872238
chr1 222011434 222011449 STAT2 JASPAR yes 35573702
chr1 222011434 222011449 STAT2 JASPAR yes 118465122
chr1 222011436 222011454 IRF2 JASPAR yes 35573703
chr1 222011436 222011454 IRF2 JASPAR yes 118465123
chr1 222011437 222011458 IRF1 JASPAR yes 35573704
chr1 222011437 222011458 IRF1 JASPAR yes 118465124
Genes associated with rs539862752[chr1:222011438], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More