EnhancerDB
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  3. rs539930671[chr17:40411187]
Enhancers that have rs539930671[chr17:40411187]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 40390345 40414201 enh4414
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Heart
Transcript factors that have rs539930671[chr17:40411187]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 40411173 40411188 MEF2A JASPAR yes 54290954
chr17 40411174 40411189 MEF2C JASPAR yes 54290955
chr17 40411175 40411187 FOXC2 JASPAR yes 54290956
chr17 40411175 40411187 MEF2A JASPAR yes 54290957
chr17 40411175 40411187 MEF2B JASPAR yes 54290958
chr17 40411175 40411187 MEF2D JASPAR yes 54290959
Genes associated with rs539930671[chr17:40411187], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More