EnhancerDB
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  3. rs539945660[chr19:2553562]
Enhancers that have rs539945660[chr19:2553562]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539945660[chr19:2553562]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2553553 2553563 MAX JASPAR yes 112073959
chr19 2553559 2553570 CDX2 JASPAR yes 112073960
chr19 2553560 2553571 HOXA10 JASPAR yes 112073961
chr19 2553561 2553570 CDX1 JASPAR yes 112073962
Genes associated with rs539945660[chr19:2553562], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More