EnhancerDB
  1. Home
  2. SNP
  3. rs540020301[chr1:204289240]
Enhancers that have rs540020301[chr1:204289240]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204280925 204295275 enh12578
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs540020301[chr1:204289240]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 21370372
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 107859825
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 21370373
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 107859826
chr1 204288972 204289894 ZNF274 GTRD no Bone Marrow (K562) 21370374
chr1 204288972 204289894 ZNF274 GTRD no Bone Marrow (K562) 107859827
chr1 204289076 204289998 ZNF274 GTRD no Bone Marrow (K562) 21370375
chr1 204289076 204289998 ZNF274 GTRD no Bone Marrow (K562) 107859828
chr1 204289106 204289792 ZBTB33 GTRD no Brain (SK-N-SH) 21370376
chr1 204289106 204289792 ZBTB33 GTRD no Brain (SK-N-SH) 107859829
chr1 204289109 204289835 ZBTB33 GTRD no Brain (SK-N-SH) 21370377
chr1 204289109 204289835 ZBTB33 GTRD no Brain (SK-N-SH) 107859830
chr1 204289188 204289752 ZNF274 GTRD no Bone Marrow (K562) 21370378
chr1 204289188 204289752 ZNF274 GTRD no Bone Marrow (K562) 107859831
chr1 204289209 204289847 ZBTB33 GTRD no Brain (SK-N-SH) 21370379
chr1 204289209 204289847 ZBTB33 GTRD no Brain (SK-N-SH) 107859832
chr1 204289232 204289253 ZNF263 JASPAR yes 34692210
Genes associated with rs540020301[chr1:204289240], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More