EnhancerDB
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  3. rs540083338[chr1:27471048]
Enhancers that have rs540083338[chr1:27471048]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27456674 27477960 enh171
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540083338[chr1:27471048]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27471044 27471058 RXRG JASPAR yes 27681498
chr1 27471044 27471059 NR2C2 JASPAR yes 27681499
chr1 27471045 27471066 ZNF263 JASPAR yes 27681500
chr1 27471048 27471054 TCF4 TRANSFAC yes 27681501
Genes associated with rs540083338[chr1:27471048], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More