EnhancerDB
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  3. rs540108081[chr1:204288797]
Enhancers that have rs540108081[chr1:204288797]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204280925 204295275 enh12578
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs540108081[chr1:204288797]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 21370372
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 107859825
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 21370373
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 107859826
chr1 204288786 204288801 FOXP1 JASPAR yes 34692107
chr1 204288787 204288798 FOXP2 JASPAR yes 34692109
chr1 204288787 204288799 FOXC2 JASPAR yes 34692110
chr1 204288788 204288799 FOXB1 JASPAR yes 34692114
chr1 204288788 204288799 FOXC1 JASPAR yes 34692115
chr1 204288789 204288797 FOXO3 JASPAR yes 34692122
chr1 204288789 204288800 FOXA1 JASPAR yes 34692123
chr1 204288796 204288809 SMAD2 JASPAR yes 34692124
Genes associated with rs540108081[chr1:204288797], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More