EnhancerDB
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  3. rs540142917[chr2:28941256]
Enhancers that have rs540142917[chr2:28941256]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 28928585 28946675 enh18396
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs540142917[chr2:28941256]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 28941253 28941263 SP1 JASPAR yes 72673306
chr2 28941253 28941272 PAX5 JASPAR yes 72673307
chr2 28941256 28941261 SP1 TRANSFAC yes 72673308
Genes associated with rs540142917[chr2:28941256], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More