EnhancerDB
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  3. rs540149326[chr1:53875955]
Enhancers that have rs540149326[chr1:53875955]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 53871953 53884901 enh26703
Prostate (PC-3) Brain (SK-N-MC) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Uterus Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Stomach
chr1 53875866 53875973 vista1619
VISTA
Transcript factors that have rs540149326[chr1:53875955]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 53875694 53876074 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803996
chr1 53875729 53876109 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803997
chr1 53875782 53876218 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803998
chr1 53875795 53876115 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803999
chr1 53875796 53876036 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804000
chr1 53875807 53876327 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804001
chr1 53875819 53876135 EBF1 UCSC Txn Factor no Conserved 107804002
chr1 53875871 53876065 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804003
chr1 53875876 53876140 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804004
chr1 53875894 53876278 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804005
chr1 53875916 53876272 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804006
chr1 53875919 53876229 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804007
chr1 53875923 53876103 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804008
chr1 53875927 53876147 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107804009
chr1 53875936 53875957 IRF1 JASPAR yes 28929643
chr1 53875936 53875957 IRF1 JASPAR yes 118291250
Genes associated with rs540149326[chr1:53875955], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More