EnhancerDB
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  3. rs540199610[chr17:48281575]
Enhancers that have rs540199610[chr17:48281575]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 48279381 48302635 enh17216
Bone Marrow (K562) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Uterus Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr17 48281415 48281783 vista25102
VISTA
Transcript factors that have rs540199610[chr17:48281575]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 48281307 48281663 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21769516
chr17 48281307 48281663 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108270613
chr17 48281341 48281726 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21769517
chr17 48281341 48281726 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108270614
chr17 48281378 48281622 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108270616
chr17 48281390 48281700 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21769518
chr17 48281390 48281700 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108270617
chr17 48281436 48281692 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21769519
chr17 48281436 48281692 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108270618
chr17 48281573 48281593 RREB1 JASPAR yes 21253912
chr17 48281573 48281593 RREB1 JASPAR yes 54686328
Genes associated with rs540199610[chr17:48281575], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More