EnhancerDB
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  3. rs540229827[chr1:22228663]
Enhancers that have rs540229827[chr1:22228663]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 22216373 22262695 enh11593
Bone Marrow (K562) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs540229827[chr1:22228663]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 22228652 22228667 HNF4G JASPAR yes 27329464
chr1 22228653 22228668 HNF4A JASPAR yes 27329465
chr1 22228657 22228663 SOX10 JASPAR yes 27329466
Genes associated with rs540229827[chr1:22228663], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More