EnhancerDB
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  3. rs540252882[chr17:25810625]
Enhancers that have rs540252882[chr17:25810625]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25791425 25838215 enh17063
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Bone (Osteoblast) Lung (A549) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540252882[chr17:25810625]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25810608 25810629 IRF1 JASPAR yes 53635393
chr17 25810609 25810630 IRF1 JASPAR yes 53635395
chr17 25810610 25810625 FOXP1 JASPAR yes 53635396
chr17 25810610 25810631 IRF1 JASPAR yes 53635397
chr17 25810611 25810626 FOXP1 JASPAR yes 53635398
chr17 25810611 25810632 IRF1 JASPAR yes 53635399
chr17 25810612 25810627 FOXP1 JASPAR yes 53635400
chr17 25810612 25810633 IRF1 JASPAR yes 53635401
chr17 25810613 25810628 FOXP1 JASPAR yes 53635402
chr17 25810613 25810634 IRF1 JASPAR yes 53635403
chr17 25810614 25810629 FOXP1 JASPAR yes 53635404
chr17 25810616 25810631 FOXP1 JASPAR yes 53635405
chr17 25810617 25810638 IRF1 JASPAR yes 53635406
chr17 25810618 25810633 FOXP1 JASPAR yes 53635407
Genes associated with rs540252882[chr17:25810625], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More