EnhancerDB
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  3. rs540259061[chr17:25877031]
Enhancers that have rs540259061[chr17:25877031]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25838865 25883455 enh17064
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs540259061[chr17:25877031]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25877029 25877039 EN2 JASPAR yes 53644320
chr17 25877029 25877039 GBX1 JASPAR yes 53644321
chr17 25877029 25877039 GBX2 JASPAR yes 53644322
chr17 25877030 25877038 DLX6 JASPAR yes 53644323
chr17 25877030 25877038 MSX1 JASPAR yes 53644324
Genes associated with rs540259061[chr17:25877031], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More