EnhancerDB
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  3. rs540259409[chr2:38923567]
Enhancers that have rs540259409[chr2:38923567]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs540259409[chr2:38923567]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38923553 38923574 IRF1 JASPAR yes 73165977
chr2 38923554 38923575 IRF1 JASPAR yes 73165978
chr2 38923558 38923579 IRF1 JASPAR yes 73165979
chr2 38923559 38923574 FOXP1 JASPAR yes 73165980
chr2 38923559 38923580 IRF1 JASPAR yes 73165981
chr2 38923560 38923581 IRF1 JASPAR yes 73165982
chr2 38923564 38923585 IRF1 JASPAR yes 73165983
chr2 38923565 38923580 FOXP1 JASPAR yes 73165984
chr2 38923565 38923586 IRF1 JASPAR yes 73165985
Genes associated with rs540259409[chr2:38923567], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More