EnhancerDB
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  3. rs540265500[chr17:62962153]
Enhancers that have rs540265500[chr17:62962153]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540265500[chr17:62962153]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62961063 62967368 ZNF143 GTRD no Epithelial (MCF-7) 21780063
chr17 62961063 62967368 ZNF143 GTRD no Epithelial (MCF-7) 108282993
chr17 62961316 62966180 ZNF143 GTRD no Epithelial (MCF-7) 21780064
chr17 62961528 62967335 ZNF143 GTRD no Epithelial (MCF-7) 21780066
chr17 62961528 62967335 ZNF143 GTRD no Epithelial (MCF-7) 108282994
chr17 62961564 62966206 ZNF143 GTRD no Epithelial (MCF-7) 21780067
chr17 62961564 62966206 ZNF143 GTRD no Epithelial (MCF-7) 108282995
chr17 62961576 62966140 ZNF143 GTRD no Epithelial (MCF-7) 21780068
chr17 62961579 62966158 ZNF143 GTRD no Epithelial (MCF-7) 21780069
chr17 62961630 62967520 ZNF143 GTRD no Epithelial (MCF-7) 21780070
chr17 62961630 62967520 ZNF143 GTRD no Epithelial (MCF-7) 108282996
chr17 62961659 62966014 ZNF143 GTRD no Epithelial (MCF-7) 21780071
chr17 62961682 62966103 ZNF143 GTRD no Epithelial (MCF-7) 21780072
chr17 62961709 62962433 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21780074
chr17 62961710 62966032 ZNF143 GTRD no Epithelial (MCF-7) 21780075
chr17 62961734 62966163 ZNF143 GTRD no Epithelial (MCF-7) 21780076
chr17 62961738 62962573 ZNF143 GTRD no Epithelial (MCF-7) 21780077
chr17 62961778 62962288 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780078
chr17 62961786 62967558 ZNF143 GTRD no Epithelial (MCF-7) 21780079
chr17 62961786 62967558 ZNF143 GTRD no Epithelial (MCF-7) 108282997
chr17 62961787 62962363 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21780080
chr17 62961787 62962383 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780081
chr17 62961808 62966060 ZNF143 GTRD no Epithelial (MCF-7) 21780082
chr17 62961822 62962438 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21780083
chr17 62961826 62968116 ZNF143 GTRD no Epithelial (MCF-7) 21780084
chr17 62961826 62968116 ZNF143 GTRD no Epithelial (MCF-7) 108282998
chr17 62961830 62962266 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780085
chr17 62961833 62962596 ZNF143 GTRD no Epithelial (MCF-7) 21780086
chr17 62961835 62962355 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780087
chr17 62961838 62962590 ZNF143 GTRD no Epithelial (MCF-7) 21780088
chr17 62961846 62962282 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780089
chr17 62961850 62962254 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780090
chr17 62961857 62962513 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21780091
chr17 62961867 62962263 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780092
chr17 62961880 62962424 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21780093
chr17 62961887 62962237 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21780094
chr17 62961888 62962224 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21780095
chr17 62961897 62962197 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21780096
chr17 62961901 62962285 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780097
chr17 62961911 62962331 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21780098
chr17 62961916 62962436 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780099
chr17 62961916 62962440 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21780100
chr17 62961935 62962291 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780101
chr17 62961936 62962278 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21780102
chr17 62961937 62962257 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780103
chr17 62961937 62962317 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780104
chr17 62961958 62962322 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780105
chr17 62961985 62962249 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780106
chr17 62961986 62962256 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780107
chr17 62961986 62962302 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21780108
chr17 62961993 62962309 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21780109
chr17 62961998 62962308 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21780110
chr17 62962003 62962507 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21780111
chr17 62962004 62962237 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21780112
chr17 62962006 62962282 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21780113
chr17 62962013 62962283 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780114
chr17 62962019 62962243 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780115
chr17 62962023 62962280 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780116
chr17 62962037 62962182 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780117
chr17 62962047 62962189 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780118
chr17 62962057 62962176 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21780119
chr17 62962090 62962206 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21780120
chr17 62962106 62962516 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21780121
chr17 62962116 62962640 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21780122
chr17 62962137 62962427 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21780123
chr17 62962147 62962397 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21780124
chr17 62962151 62962160 HIC2 JASPAR yes 55332326
chr17 62962152 62962164 INSM1 JASPAR yes 55332327
Genes associated with rs540265500[chr17:62962153], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More