EnhancerDB
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  3. rs540273404[chr12:50921218]
Enhancers that have rs540273404[chr12:50921218]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540273404[chr12:50921218]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50921208 50921223 FOXA1 JASPAR yes 120838678
chr12 50921209 50921224 FOXP1 JASPAR yes 120838679
chr12 50921210 50921222 FOXC2 JASPAR yes 120838680
chr12 50921210 50921224 POU1F1 JASPAR yes 120838681
chr12 50921211 50921222 FOXB1 JASPAR yes 120838685
chr12 50921211 50921222 FOXC1 JASPAR yes 120838686
chr12 50921212 50921223 FOXA1 JASPAR yes 120838688
chr12 50921215 50921222 NKX3-1 JASPAR yes 120838689
Genes associated with rs540273404[chr12:50921218], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More