EnhancerDB
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  3. rs540291921[chr6:35563528]
Enhancers that have rs540291921[chr6:35563528]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 35560685 35576643 enh9078
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540291921[chr6:35563528]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 35563522 35563537 MEF2C JASPAR yes 101293400
chr6 35563524 35563545 IRF1 JASPAR yes 101293401
chr6 35563525 35563540 FOXP1 JASPAR yes 101293402
chr6 35563528 35563543 PRDM1 JASPAR yes 101293403
chr6 35563528 35563543 STAT2 JASPAR yes 101293404
Genes associated with rs540291921[chr6:35563528], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More