EnhancerDB
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  3. rs540387629[chr17:49029830]
Enhancers that have rs540387629[chr17:49029830]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 49015225 49039275 enh17224
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540387629[chr17:49029830]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 49029235 49029885 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21771711
chr17 49029265 49029921 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21771712
chr17 49029346 49029850 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21771714
chr17 49029398 49029862 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21771721
chr17 49029502 49029878 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21771729
chr17 49029813 49029830 RXRA JASPAR yes 54738492
chr17 49029818 49029830 PKNOX1 JASPAR yes 54738493
chr17 49029823 49029831 MEIS2 JASPAR yes 54738494
chr17 49029823 49029831 MEIS3 JASPAR yes 54738495
chr17 49029826 49029837 NRL JASPAR yes 54738497
Genes associated with rs540387629[chr17:49029830], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More