EnhancerDB
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  3. rs540427408[chr3:55654442]
Enhancers that have rs540427408[chr3:55654442]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 55647472 55668015 enh7230
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr3 55654086 55654842 vista41047
VISTA
Transcript factors that have rs540427408[chr3:55654442]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 55654356 55654536 SPI1 UCSC Txn Factor no Conserved 108529319
chr3 55654422 55654443 IRF1 JASPAR yes 2532256
chr3 55654422 55654443 IRF1 JASPAR yes 70988025
chr3 55654431 55654444 ELF1 JASPAR yes 2532259
chr3 55654431 55654444 ELF1 JASPAR yes 70988028
chr3 55654431 55654445 SPI1 JASPAR yes 2532260
chr3 55654431 55654445 SPI1 JASPAR yes 70988029
chr3 55654437 55654447 EN2 JASPAR yes 2532261
chr3 55654437 55654447 EN2 JASPAR yes 70988030
chr3 55654441 55654456 RUNX2 JASPAR yes 2532262
chr3 55654441 55654456 RUNX2 JASPAR yes 70988031
chr3 55654442 55654453 RUNX1 JASPAR yes 2532263
chr3 55654442 55654453 RUNX1 JASPAR yes 70988032
Genes associated with rs540427408[chr3:55654442], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More