EnhancerDB
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  3. rs540491815[chr1:204076857]
Enhancers that have rs540491815[chr1:204076857]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540491815[chr1:204076857]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204072392 204077605 ZNF143 GTRD no Epithelial (MCF-7) 21370176
chr1 204072392 204077605 ZNF143 GTRD no Epithelial (MCF-7) 107859647
chr1 204072587 204077369 ZNF143 GTRD no Epithelial (MCF-7) 21370178
chr1 204072587 204077369 ZNF143 GTRD no Epithelial (MCF-7) 107859649
chr1 204072758 204076983 ZNF143 GTRD no Epithelial (MCF-7) 21370190
chr1 204072758 204076983 ZNF143 GTRD no Epithelial (MCF-7) 107859661
chr1 204076857 204076864 SP1 TRANSFAC yes 34680933
chr1 204076857 204076867 SP1 JASPAR yes 34680934
Genes associated with rs540491815[chr1:204076857], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More