EnhancerDB
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  3. rs540534394[chr12:125027860]
Enhancers that have rs540534394[chr12:125027860]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125019933 125050377 enh2674
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr12 125027797 125027993 vista15289
VISTA
Transcript factors that have rs540534394[chr12:125027860]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125027706 125028142 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21580957
chr12 125027706 125028142 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108068836
chr12 125027789 125028065 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21580958
chr12 125027789 125028065 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108068837
chr12 125027796 125028160 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21580959
chr12 125027796 125028160 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108068838
chr12 125027806 125028070 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21580960
chr12 125027806 125028070 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108068839
chr12 125027827 125028059 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21580961
chr12 125027827 125028059 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108068840
chr12 125027827 125028097 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21580962
chr12 125027827 125028097 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108068841
chr12 125027851 125027866 RFX5 JASPAR yes 82495653
chr12 125027851 125027866 RFX5 JASPAR yes 124391755
Genes associated with rs540534394[chr12:125027860], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More