EnhancerDB
  1. Home
  2. SNP
  3. rs540548421[chr3:56804478]
Enhancers that have rs540548421[chr3:56804478]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 56786742 56805635 enh20640
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Placenta Thyroid Lung (PC-9) Pancreas Muscle (Myotube) Uterus Blood (T-cell) Heart
Transcript factors that have rs540548421[chr3:56804478]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 56804468 56804483 MEF2C JASPAR yes 2592656
chr3 56804469 56804481 POU3F1 JASPAR yes 2592657
chr3 56804469 56804481 POU3F2 JASPAR yes 2592658
chr3 56804469 56804482 POU3F3 JASPAR yes 2592659
chr3 56804469 56804484 MEF2A JASPAR yes 2592660
chr3 56804470 56804482 POU2F1 JASPAR yes 2592661
chr3 56804473 56804494 IRF1 JASPAR yes 2592662
chr3 56804476 56804490 IRF7 JASPAR yes 2592663
Genes associated with rs540548421[chr3:56804478], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More