EnhancerDB
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  3. rs540614948[chr17:25853960]
Enhancers that have rs540614948[chr17:25853960]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25838865 25883455 enh17064
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs540614948[chr17:25853960]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25853959 25853980 IRF1 JASPAR yes 53641162
chr17 25853960 25853975 LEF1 JASPAR yes 53641163
chr17 25853960 25853975 NR2C2 JASPAR yes 53641164
chr17 25853960 25853981 ZNF263 JASPAR yes 53641165
Genes associated with rs540614948[chr17:25853960], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More